Oryza sativa| Assembly Name | Biological Sample | Assembly Level | Annotation (gff / gff3) |
Gene (cds / gene) |
Hayai Annotation ZEN |
Transcripts (cDNA / mRNA) |
Amino Acid (pep / aa) |
Download | JBrowse | Comments |
|---|---|---|---|---|---|---|---|---|---|---|
subsp. indica, cv. 93-11 |
Chromosome |
● |
● |
● |
● |
|
|
NA |
||
subsp. japonica, cv. Nipponbare |
Chromosome |
● |
● |
● |
● |
● |
|
|
NA |
Sequence Type |
Biological Sample | Sequence Name | Accession | JBrowse | Comments | |||
|---|---|---|---|---|---|---|---|---|
IRGSP-1.0 |
||||||||
Whole Genome Sequence (Short Read) |
W0106 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1921 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1921 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0106 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0593 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1236 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0630 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0120 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1715 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0180 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1230 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1981 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
KINMAZE |
|
Japonica Group |
|||||
Whole Genome Sequence (Short Read) |
KOSHIHIKARI |
|
Japonica Group |
|||||
Whole Genome Sequence (Short Read) |
NIPPONBARE |
|
Japonica Group |
|||||
Whole Genome Sequence (Short Read) |
W2114 |
|
O. rufipogon/O. meridionalis, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2117 |
|
O. rufipogon/O. meridionalis, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0137 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0630 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1551 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1669 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1681 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1715 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1807 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1866 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1921 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1945 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1962 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2003 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2051 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2078 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2109 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2263 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
IRGC105444 |
|
O. rufipogon |
|||||
Whole Genome Sequence (Short Read) |
IRGC105715 |
|
O. rufipogon |
|||||
Whole Genome Sequence (Short Read) |
IRGC105908 |
|
O. rufipogon |
|||||
Whole Genome Sequence (Short Read) |
Lucaihao |
|
||||||
Whole Genome Sequence (Short Read) |
Huanan15 |
|
||||||
Whole Genome Sequence (Short Read) |
Guiyangai49 |
|
||||||
Whole Genome Sequence (Short Read) |
Guichao2hao |
|
||||||
Whole Genome Sequence (Short Read) |
Fengqingai |
|
||||||
Whole Genome Sequence (Short Read) |
Huasizhan |
|
||||||
Whole Genome Sequence (Short Read) |
Teqing |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Longhui11 |
|
||||||
Whole Genome Sequence (Short Read) |
Nanhui511 |
|
||||||
Whole Genome Sequence (Short Read) |
Xianghui529 |
|
||||||
Whole Genome Sequence (Short Read) |
Jinhui275 |
|
||||||
Whole Genome Sequence (Short Read) |
Huhui5240 |
|
||||||
Whole Genome Sequence (Short Read) |
3301R |
|
||||||
Whole Genome Sequence (Short Read) |
Qingerai |
|
||||||
Whole Genome Sequence (Short Read) |
Jiduilun |
|
||||||
Whole Genome Sequence (Short Read) |
Kuoyedao |
|
||||||
Whole Genome Sequence (Short Read) |
Yeqinglun |
|
||||||
Whole Genome Sequence (Short Read) |
Yangdao6hao |
|
||||||
Whole Genome Sequence (Short Read) |
Momi |
|
||||||
Whole Genome Sequence (Short Read) |
Sanbaili |
|
||||||
Whole Genome Sequence (Short Read) |
D62B |
|
||||||
Whole Genome Sequence (Short Read) |
G46B |
|
||||||
Whole Genome Sequence (Short Read) |
Huangxiuzhan |
|
||||||
Whole Genome Sequence (Short Read) |
Y58s |
|
||||||
Whole Genome Sequence (Short Read) |
Mallige |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Jenugudu |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Padma rekha |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Aakkalu |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Aadikuni batta |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Bidagi Kannappa |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Bangara Sanna |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Daanggia |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Aadribatta |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Marnavami gidda |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Pungar |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Karikandaka |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
Kari kagga |
|
Indica Group |
|||||
Whole Genome Sequence (Short Read) |
cultivated_rice_126 |
|
||||||
Whole Genome Sequence (Short Read) |
W0593 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1294 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1807 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2003 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1976 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W2057 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0120 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W0630 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1886 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
W1965 |
|
O. rufipogon, NBRP |
|||||
Whole Genome Sequence (Short Read) |
SAGCLZ-040 |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
rice |
|
||||||
Whole Genome Sequence (Short Read) |
CarolinaGold |
|
||||||
Whole Genome Sequence (Short Read) |
CarolinaGoldSelect |
|
||||||
Whole Genome Sequence (Short Read) |
Catahoula |
|
||||||
Whole Genome Sequence (Short Read) |
CL131 |
|
||||||
Whole Genome Sequence (Short Read) |
Della2 |
|
||||||
Whole Genome Sequence (Short Read) |
Dixiebelle |
|
||||||
Whole Genome Sequence (Short Read) |
Hidalgo |
|
||||||
Whole Genome Sequence (Short Read) |
IAC600 |
|
||||||
Whole Genome Sequence (Short Read) |
Saber |
|
||||||
Whole Genome Sequence (Short Read) |
175-1-127 |
|
||||||
Whole Genome Sequence (Short Read) |
CT19021-3-4-1V1-1 |
|
||||||
Whole Genome Sequence (Short Read) |
CT21375-F4-43-1 |
|
||||||
Whole Genome Sequence (Short Read) |
Fanny |
|
||||||
Whole Genome Sequence (Short Read) |
IRGA427 |
|
||||||
Whole Genome Sequence (Short Read) |
L2825-CA |
|
||||||
Whole Genome Sequence (Short Read) |
Oryzica3 |
|
||||||
Whole Genome Sequence (Short Read) |
Parao |
|
||||||
Whole Genome Sequence (Short Read) |
Pionero2010FL |
|
||||||
Whole Genome Sequence (Short Read) |
Pitai |
|
||||||
Whole Genome Sequence (Short Read) |
Dee geo woo gen |
|
||||||
Whole Genome Sequence (Short Read) |
IR8 |
|
||||||
Whole Genome Sequence (Short Read) |
IR24 |
|
||||||
Whole Genome Sequence (Short Read) |
IR20 |
|
||||||
Whole Genome Sequence (Short Read) |
IR26 |
|
||||||
Whole Genome Sequence (Short Read) |
IR30 |
|
||||||
Whole Genome Sequence (Short Read) |
GUI630 |
|
||||||
Whole Genome Sequence (Short Read) |
Minghui63 |
|
||||||
Whole Genome Sequence (Short Read) |
CDR22 |
|
||||||
Whole Genome Sequence (Short Read) |
Chenghui047 |
|
||||||
Whole Genome Sequence (Short Read) |
Fuhui838 |
|
||||||
Whole Genome Sequence (Short Read) |
Hanghui570 |
|
||||||
Whole Genome Sequence (Short Read) |
Minghui70 |
|
||||||
Whole Genome Sequence (Short Read) |
Mianhui725 |
|
||||||
Whole Genome Sequence (Short Read) |
Minghui86 |
|
||||||
Whole Genome Sequence (Short Read) |
Wanhui88 |
|
||||||
Whole Genome Sequence (Short Read) |
IR1544 |
|
||||||
Whole Genome Sequence (Short Read) |
Shuhui527 |
|
||||||
Whole Genome Sequence (Short Read) |
IR36 |
|
||||||
Whole Genome Sequence (Short Read) |
Chuannong422 |
|
||||||
Whole Genome Sequence (Short Read) |
Guangchang13 |
|
||||||
Whole Genome Sequence (Short Read) |
Luchang-3 |
|
||||||
Whole Genome Sequence (Short Read) |
Nante |
|
||||||
Whole Genome Sequence (Short Read) |
Shenglixian |
|
||||||
Whole Genome Sequence (Short Read) |
Tetep |
|
||||||
Whole Genome Sequence (Short Read) |
Wanlixian |
|
||||||
Whole Genome Sequence (Short Read) |
Zhongnong-4 |
|
||||||
Whole Genome Sequence (Short Read) |
W1543 |
|
f. spontanea |
|||||