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| Acer yangbiense | Chinese Maple | Sapindaceae | t1000413 |
| Actinidia chinensis | Kiwifruit (chinensis) | Actinidiaceae | t3625 |
| Actinidia eriantha | Kiwifruit (eriantha) | Actinidiaceae | t165200 |
| Aegilops tauschii subsp. strangulata | Tausch's goatgrass | Poaceae | t37682 |
| Amaranthus hypochondriacus | Grain amaranth | Amaranthaceae | t28502 |
| Ananas comosus | Pineapple | Bromeliaceae | t4615 |
| Antirrhinum majus | Snapdragon | Plantaginaceae | t4151 |
| Apium graveolens | Celery | Apiaceae | t4045 |
| Arabidopsis thaliana | Thale cress | Brassicaceae | t3702 |
| Arabis alpina | Alpine rock cress | Brassicaceae | t50452 |
| Arachis duranensis | Wild peanut (duranensis) | Fabaceae | t130453 |
| Arachis hypogaea | Peanut, Groundnut | Fabaceae | t3818 |
| Arachis ipaensis | Wild peanut (ipaensis) | Fabaceae | t130454 |
| Arachis monticola | Wild peanut (monticola) | Fabaceae | t227691 |
| Asparagus officinalis | Garden asparagus | Asparagaceae | t4686 |
| Bathycoccus prasinos | Bathycoccus prasinos | Bathycoccaceae | t41875 |
| Benincasa hispida | Wax gourd | Cucurbitaceae | t102211 |
| Beta vulgaris subsp. vulgaris | Beet, Sugar beet | Amaranthaceae | t161934 |
| Brachypodium distachyon | Purple falsebrome | Poaceae | t15368 |
| Brassica juncea | Leaf mustard | Brassicaceae | t3707 |
| Brassica napus | Rapeseed | Brassicaceae | t3708 |
| Brassica nigra | Black mustard | Brassicaceae | t3710 |
| Brassica oleracea var. alboglabra | Cabbage, etc | Brassicaceae | t3712 |
| Brassica oleracea var. capitata | Cabbage | Brassicaceae | t3712 |
| Brassica oleracea var. italica | Broccoli | Brassicaceae | t3712 |
| Brassica oleracea var. sabauda | Savoy cabbage | Brassicaceae | t3712 |
| Brassica oleracea var. viridis | Kale | Brassicaceae | t3712 |
| Brassica rapa | Chinese cabbage, etc | Brassicaceae | t3711 |
| Brassica rapa subsp. campestris | Field mustard | Brassicaceae | t3711 |
| Brassica rapa subsp. chinensis | Pac-choy, Bok-choy | Brassicaceae | t3711 |
| Brassica rapa subsp. oleifera | Birdsrape mustard | Brassicaceae | t3711 |
| Brassica rapa subsp. pekinensis | Chinese cabbage | Brassicaceae | t3711 |
| Brassica rapa var. purpurea | Purple-stem mustard | Brassicaceae | t3711 |
| Brassica rapa subsp. rapa | Turnip | Brassicaceae | t3711 |
| Brassica rapa subsp. trilocularis | Yellow sarson | Brassicaceae | t3711 |
| Cajanus cajan | Pigeon pea | Fabaceae | t3821 |
| Camelina sativa | False flax | Brassicaceae | t90675 |
| Cannabis sativa | Hemp, Marijuana | Cannabaceae | t3483 |
| Capsicum annuum | Chili pepper | Solanaceae | t4072 |
| Capsicum annuum var. annuum | Chilli pepper (annuum), Wild chili pepper (glabriusculum), Chiltepin | Solanaceae | t4072 |
| Capsicum annuum var. glabriusculum | Chilli pepper (annuum), Wild chili pepper (glabriusculum), Chiltepin | Solanaceae | t4072 |
| Capsicum baccatum | Yellow hot pepper | Solanaceae | t33114 |
| Capsicum chinense | Bonnet pepper | Solanaceae | t80379 |
| Cenchrus americanus | Pearl millet | Poaceae | t4543 |
| Chlamydomonas reinhardtii | Chlamydomonas | Chlamydomonadaceae | t3055 |
| Chloropicon primus | Chloropicon primus | Chloropicaceae | t1764295 |
| Chromochloris zofingiensis | Chromochloris zofingiensis | Chromochloridaceae | t31302 |
| Chrysanthemum seticuspe | Wild chrysanthemum (seticuspe) | Asteraceae | t1111766 |
| Cicer arietinum | Chickpea | Fabaceae | t3827 |
| Citrullus lanatus | Watermelon | Cucurbitaceae | t3654 |
| Citrus clementina | Clementine | Rutaceae | t85681 |
| Citrus maxima | Pummelo, Pomelo | Rutaceae | t37334 |
| Citrus sinensis | Orange | Rutaceae | t2711 |
| Coffea arabica | Arabica coffee | Rubiaceae | t13443 |
| Coffea canephora | Robusta coffee | Rubiaceae | t49390 |
| Cucumis melo | Melon | Cucurbitaceae | t3656 |
| Cucumis melo subsp. agrestis | Wild melon (agrestis) | Cucurbitaceae | t3656 |
| Cucumis melo subsp. melo | Melon | Cucurbitaceae | t3656 |
| Cucumis sativus | Cucumber | Cucurbitaceae | t3659 |
| Cucumis sativus var. hardwickii | Wild cucumber (var. hardwickii) | Cucurbitaceae | t3659 |
| Cucumis sativus var. sativus | Cucumber | Cucurbitaceae | t3659 |
| Cucumis sativus var. xishuangbannanesis | Semi-wild Xishuangbanna cucumber | Cucurbitaceae | t3659 |
| Cucurbita maxima | Winter pumpkin, Winter squash | Cucurbitaceae | t3661 |
| Cucurbita moschata | Tropical pumpkin, Tropical squash | Cucurbitaceae | t3662 |
| Cucurbita pepo subsp. pepo | Zucchini | Cucurbitaceae | t3663 |
| Cyanidioschyzon merolae | Chyzon | Cyanidiaceae | t45157 |
| Daucus carota | Carrot | Apiaceae | t4039 |
| Dioscorea rotundata | Yam | Dioscoreaceae | t55577 |
| Elaeis guineensis | African oil palm | Arecaceae | t51953 |
| Eragrostis curvula | Weeping lovegrass | Poaceae | t38414 |
| Eucalyptus grandis | Rose gum | Myrtaceae | t71139 |
| Fagopyrum tataricum | Tartary buckwheat | Polygonaceae | t62330 |
| Ficus carica | Common fig | Moraceae | t3494 |
| Ficus erecta | Japanese fig | Moraceae | t66383 |
| Fragaria vesca | Wild strawberry (vesca) | Rosaceae | t57918 |
| Fragaria x ananassa | Strawberry | Rosaceae | t3747 |
| Glycine max | Soybean | Fabaceae | t3847 |
| Glycine soja | Wild soybean (soja) | Fabaceae | t3848 |
| Gossypium arboreum | Asian cotton | Malvaceae | t29729 |
| Gossypium barbadense | Sea Island cotton | Malvaceae | t3634 |
| Gossypium hirsutum | Upland cotton | Malvaceae | t3635 |
| Gossypium raimondii | Wild cotton (raimondii) | Malvaceae | t29730 |
| Helianthus annuus | Sunflower | Asteraceae | t4232 |
| Hevea brasiliensis | Rubber tree | Euphorbiaceae | t3981 |
| Hordeum vulgare | Barley, Wild barley (spontaneum) | Poaceae | t4513 |
| Hydrangea macrophylla | Hydrangea | Hydrangeaceae | t23110 |
| Ipomoea nil | Japanese morning glory | Convolvulaceae | t35883 |
| Ipomoea trifida | Wild sweet potato (trifida) | Convolvulaceae | t35884 |
| Ipomoea triloba | Wild sweet potato (triloba), Littlebell | Convolvulaceae | t35885 |
| Lactuca sativa | Lettuce | Asteraceae | t4236 |
| Lagenaria siceraria | Bottle gourd | Cucurbitaceae | t3668 |
| Lotus japonicus | Japanese trefoil | Fabaceae | t34305 |
| Lupinus albus | White lupin | Fabaceae | t3870 |
| Lupinus angustifolius | Blue lupine | Fabaceae | t3871 |
| Macrotyloma uniflorum | Horsegram, Madras bean | Fabaceae | t271171 |
| Malus x domestica | Apple | Rosaceae | t3750 |
| Manihot esculenta | Cassava | Euphorbiaceae | t3983 |
| Marchantia polymorpha subsp. ruderalis | Umbrella liverwort | Marchantiaceae | t3197 |
| Medicago truncatula | Barrel clover | Fabaceae | t3880 |
| Micromonas commoda | Micromonas | Mamiellaceae | t296587 |
| Mikania micrantha | Bitter vine | Asteraceae | t192012 |
| Musa acuminata subsp. malaccensis | Wild banana (acuminata) | Musaceae | t4641 |
| Musa balbisiana | Wild banana (balbisiana) | Musaceae | t52838 |
| Musa schizocarpa | Wild banana (schizocarpa) | Musaceae | t52706 |
| Nicotiana attenuata | Wild tobacco (attenuata), Coyote tobacco | Solanaceae | t49451 |
| Nymphaea colorata | Water lily | Nymphaeaceae | t210225 |
| Olea europaea var. sylvestris_ | Olive, Wild olive (sylvestris) | Oleaceae | t4146 |
| Ophiorrhiza pumila | Ophiorrhiza pumila | Rubiaceae | t157934 |
| Oryza glaberrima | African rice | Poaceae | t4538 |
| Oryza sativa subsp. indica | Rice, Indica rice, Japonica rice | Poaceae | t4530 |
| Oryza sativa subsp. japonica | Rice, Indica rice, Japonica rice | Poaceae | t4530 |
| Ostreococcus lucimarinus | Ostreococcus | Bathycoccaceae | t242159 |
| Papaver somniferum | Opium poppy | Papaveraceae | t3469 |
| Phaseolus vulgaris | Green bean | Fabaceae | t3885 |
| Physcomitrella patens | Spreading earthmoss | Funariaceae | t3218 |
| Pisum sativum | garden pea | Fabaceae | t3888 |
| Populus trichocarpa | Poplar | Salicaceae | t3694 |
| Prunus avium | Sweet cherry | Rosaceae | t42229 |
| Prunus dulcis | Almond | Rosaceae | t3755 |
| Prunus mume | Japanese apricot | Rosaceae | t102107 |
| Prunus persica | Peach, Nectarine | Rosaceae | t3760 |
| Punica granatum | Pomegranate | Lythraceae | t22663 |
| Pyropia yezoensis | Seaweed, Susabi-nori | Bangiaceae | t2788 |
| Pyrus betulifolia | Wild pear (betulifolia) | Rosaceae | t436086 |
| Pyrus communis | European pear | Rosaceae | t23211 |
| Pyrus pyrifolia | Japanese pear | Rosaceae | t3767 |
| Raphanus sativus | Radish | Brassicaceae | t3726 |
| Saccharum spontaneum | Wild sugarcane (spontaneum) | Poaceae | t62335 |
| Schrenkiella parvula (formerly Thellungiella parvula) | Schrenkiella | Brassicaceae | t98039 |
| Sesamum indicum | Sesame | Pedaliaceae | t4182 |
| Solanum lycopersicum | Tomato | Solanaceae | t4081 |
| Solanum lycopersicum var. cerasiforme | Cherry tomato | Solanaceae | t4081 |
| Solanum pennellii | Wild tomato (pennellii) | Solanaceae | t28526 |
| Solanum pimpinellifolium | Wild tomato (pimpinellifolium) | Solanaceae | t4084 |
| Solanum tuberosum | Potato | Solanaceae | t4113 |
| Sorghum bicolor | Sorghum | Poaceae | t4558 |
| Theobroma cacao | Cacao | Malvaceae | t3641 |
| Trifolium pratense | Red clover | Fabaceae | t57577 |
| Trifolium subterraneum | Sub clover | Fabaceae | t3900 |
| Triticum aestivum | Bread wheat | Poaceae | t4565 |
| Triticum turgidum | Durum wheat | Poaceae | t4571 |
| Vigna angularis var. angularis | Adzuki bean | Fabaceae | t3914 |
| Vigna radiata var. radiata | Mungbean | Fabaceae | t157791 |
| Vigna unguiculata | Cowpea | Fabaceae | t3917 |
| Vitis labruscana x Vitis vinifera | Hybrid grape | Vitaceae | t2599122 |
| Vitis vinifera | European grape | Vitaceae | t29760 |
| Zea mays | Maize, Corn | Poaceae | t4577 |
| Ziziphus jujuba | Jujube | Rhamnaceae | t326968 |
| Zoysia japonica | Japanese lawn grass | Poaceae | t309978 |