Run BLAST

TimeStamp: 2025-04-23 07:59:36

Select BLAST program

BLASTN (Search for nucleotide sequence against nucleotide DB)

BLASTP (Search for protein sequence against protein DB)

BLASTX (Search for nucleotide sequence against protein DB)

TBLASTN (Search for protein sequence against translated nucleotide DB)

TBLASTX (Search for translated nucleotide sequence against translated nucleotide DB)

Select reference sequences

Plant Species

Reset

Select All

Enter sequence to search

FASTA Format

Multiple FASTA sequences can be input. When the ‘Check for faster results’ option is selected at the bottom of the page, multiple sequences are searched at once. Only the first sequence will be searched if the option is not selected.

Number of Search Results to Display (optional)

Search resultsMAX

Sequence alignmentsMAX

Other options

BLASTN only: Fast search for short nucleotide sequences (≤50 bases, e.g., primers).

Filtering of Query Sequences (DUST for BLASTN, SEG for others)

Generate alignments without gaps.

E-value

1e-10

Check for faster results.

Check for faster results: Checked → Result: Text format, Multiple FASTA input: Enabled (Allows searching multiple sequences)
Check for faster results: Unchecked → Result: GUI format, Multiple FASTA input: Disabled (Allows searching only the first sequence)