Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Oryza sativa subsp. japonica , Indica rice , イネ ジャポニカ亜種

Oryza sativa

Genome Assembly ID:t4530.G002

Sequence Name:IRGSP-1.0

Details of the Assembled Genome Sequences

Assembly Name IRGSP-1.0 Biological Sample subsp. japonica, cv. Nipponbare
Number of Sequences 63 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 375,049,285 N50 Length (bp) 29,958,434
Number of Genes 42,373 Number of Genes Source File Oryza_sativa.IRGSP-1.0.pep.all.fa
Number of Genes Annotated by Hayai-annotation 42,373 Hayai-Annotation Version zen_v2.0
Sequencing Method illumina, Roche 454 Read Depth NA
Assembly Method NA Estimated Genome Size (Mb) 385
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Takeshi Itoh (National Institute of Agrobiological Sciences) Data Source Ensembl
DOI/PMID 10.1186/1939-8433-6-4 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.7%[S:96.7%,D:2.0%],F:0.9%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:80.2%[S:67.3%,D:12.9%],F:9.1%,M:10.7%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format