Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Oryza sativa subsp. indica , Japonica rice , イネ インディカ亜種

Oryza sativa

Genome Assembly ID:t4530.G001

Sequence Name:ASM465v1

Details of the Assembled Genome Sequences

Assembly Name ASM465v1 Biological Sample subsp. indica, cv. 93-11
Number of Sequences 10,490 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 427,004,890 N50 Length (bp) 31,240,961
Number of Genes 40,745 Number of Genes Source File Oryza_indica.ASM465v1.pep.all.fa
Number of Genes Annotated by Hayai-annotation 40,745 Hayai-Annotation Version zen_v2.0
Sequencing Method WGS, BAC Read Depth NA
Assembly Method NA Estimated Genome Size (Mb) 489
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Jun Yu (Beijing Genomics Institute), Huanming Yang (ditto), Jian Wang (ditto), Gane Ka-Shu Wong (ditto) Data Source Ensembl
DOI/PMID 10.1371/journal.pbio.0030038 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:96.3%[S:93.9%,D:2.4%],F:2.2%,M:1.5%,n:1614 BUSCO Gene (pep/cds) C:92.4%[S:90.2%,D:2.2%],F:4.5%,M:3.1%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format