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Data List

All Markers Trait-Related Loci
Brassica rapa

Assembled Sequences

Brassica rapa subsp. pekinensis , Chinese cabbage , ハクサイ (pekinensis亜種) , Brassica rapa subsp. trilocularis , Yellow sarson , ヒノナ, イエローサルソン , Brassica rapa subsp. chinensis , Pakchoi , パクチョイ, パクチー , Brassica rapa subsp. trilocularis , Yellow sarson , ヒノナ, イエローサルソン , GenBank , EMBL , DDBJ

Assembly Name Biological Sample Assembly Level Annotation
(gff / gff3)		 Gene
(cds / gene)		 Hayai
Annotation
ZEN		 Transcripts
(cDNA / mRNA)		 Amino Acid
(pep / aa)		 Download JBrowse Comments

Brapa_sequence_v3.0

subsp. pekinensis, inbred line Chiifu-401-42, Chinese cabbage

Chromosome

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●

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Chinese Cabbage, accession Chiifu-401-42

BrapaZ1

ssp. trilocularis, A doubled haploid line Z1, Yellow sarson

Chromosome

●

●

●

●

Yellow sarson, A doubled haploid line

Bchinensis_genome_201910_v2

ssp. chinensis, cv. PC-fu, Pakchoi

Chromosome

●

●

●

NA

brapa_z1_v2

ssp. trilocularis, A doubled haploid line Z1, Yellow sarson

Chromosome

●

●

●

●

Yellow sarson, A doubled haploid line

SRA Sequences

Sequence Type

 Biological Sample Sequence Name Accession JBrowse Comments

Brapa_sequence_v3.0

Whole Genome Sequence (Short Read)

Brassica rapa SamA_136

SRA365890

SRX1611061

Whole Genome Sequence (Short Read)

Brassica rapa SamA_140

SRA365890

SRX1611066

Whole Genome Sequence (Short Read)

Brassica rapa SamA_152

SRA365890

SRX1611121

Whole Genome Sequence (Short Read)

Brassica rapa SamA_153

SRA365890

SRX1611122

Whole Genome Sequence (Short Read)

Brassica rapa SamA_160

SRA365890

SRX1611187

Whole Genome Sequence (Short Read)

Brassica rapa SamA_170

SRA365890

SRX1611200

Whole Genome Sequence (Short Read)

Brassica rapa SamA_176

SRA365890

SRX1611213

Whole Genome Sequence (Short Read)

Brassica rapa SamA_186

SRA365890

SRX1611318

Whole Genome Sequence (Short Read)

Brassica rapa SamA_189

SRA365890

SRX1611334

Whole Genome Sequence (Short Read)

Brassica rapa SamA_195

SRA365890

SRX1611361

Whole Genome Sequence (Short Read)

Brassica rapa SamA_196

SRA365890

SRX1611362

Whole Genome Sequence (Short Read)

Brassica rapa SamA_197

SRA365890

SRX1611487

Whole Genome Sequence (Short Read)

Brassica rapa SamA_050

SRA365890

SRX1613034

Whole Genome Sequence (Short Read)

Brassica rapa SamA_053

SRA365890

SRX1613094

Whole Genome Sequence (Short Read)

Brassica rapa SamA_054

SRA365890

SRX1613106

Whole Genome Sequence (Short Read)

Brassica rapa SamA_056

SRA365890

SRX1613112

Whole Genome Sequence (Short Read)

Brassica rapa SamA_057

SRA365890

SRX1613123

Whole Genome Sequence (Short Read)

Brassica rapa SamA_058

SRA365890

SRX1613127

Whole Genome Sequence (Short Read)

Brassica rapa SamA_060

SRA365890

SRX1613148

Whole Genome Sequence (Short Read)

Brassica rapa SamA_072

SRA365890

SRX1613230

Whole Genome Sequence (Short Read)

Brassica rapa SamA_073

SRA365890

SRX1613232

Whole Genome Sequence (Short Read)

Brassica rapa SamA_074

SRA365890

SRX1613263

Whole Genome Sequence (Short Read)

Brassica rapa SamA_077

SRA365890

SRX1613293

Whole Genome Sequence (Short Read)

Brassica rapa SamA_080

SRA365890

SRX1613296

Whole Genome Sequence (Short Read)

Brassica rapa SamA_081

SRA365890

SRX1613356

Whole Genome Sequence (Short Read)

Brassica rapa SamA_087

SRA365890

SRX1613561

Whole Genome Sequence (Short Read)

Brassica rapa SamA_097

SRA365890

SRX1613685

Whole Genome Sequence (Short Read)

Brassica rapa SamA_098

SRA365890

SRX1613686

Whole Genome Sequence (Short Read)

Brassica rapa SamA_099

SRA365890

SRX1613688

Whole Genome Sequence (Short Read)

Brassica rapa SamA_100

SRA365890

SRX1613692

Whole Genome Sequence (Short Read)

a49

SRA690251

SRX3938760

Whole Genome Sequence (Short Read)

a71

SRA690251

SRX3938771

Whole Genome Sequence (Short Read)

a11

SRA690251

SRX3938779

Whole Genome Sequence (Short Read)

a66

SRA690251

SRX3938789

Whole Genome Sequence (Short Read)

a68

SRA690251

SRX3938791

Whole Genome Sequence (Short Read)

a94

SRA690251

SRX3938798

Whole Genome Sequence (Short Read)

a99

SRA690251

SRX3938801

Whole Genome Sequence (Short Read)

a10

SRA690251

SRX3938812

Whole Genome Sequence (Short Read)

a7

SRA690251

SRX3938817

Whole Genome Sequence (Short Read)

a1

SRA690251

SRX3938819

Whole Genome Sequence (Short Read)

a88

SRA690251

SRX3938823

Whole Genome Sequence (Short Read)

a107

SRA690251

SRX3938830

Whole Genome Sequence (Short Read)

a105

SRA690251

SRX3938831

Whole Genome Sequence (Short Read)

a106

SRA690251

SRX3938832

Whole Genome Sequence (Short Read)

115

SRA760126

SRX4562213

subsp. pekinensis

Whole Genome Sequence (Short Read)

32

SRA760126

SRX4562219

subsp. pekinensis

Whole Genome Sequence (Short Read)

34

SRA760126

SRX4562221

subsp. pekinensis

Whole Genome Sequence (Short Read)

33

SRA760126

SRX4562222

subsp. pekinensis

Whole Genome Sequence (Short Read)

35

SRA760126

SRX4562223

subsp. pekinensis

Whole Genome Sequence (Short Read)

192

SRA760126

SRX4562224

subsp. pekinensis

Whole Genome Sequence (Short Read)

191

SRA760126

SRX4562225

subsp. pekinensis

Whole Genome Sequence (Short Read)

158

SRA760126

SRX4562237

subsp. pekinensis

Whole Genome Sequence (Short Read)

7

SRA760126

SRX4562242

subsp. pekinensis

Whole Genome Sequence (Short Read)

9

SRA760126

SRX4562244

subsp. pekinensis

Whole Genome Sequence (Short Read)

139

SRA760126

SRX4562246

subsp. pekinensis

Whole Genome Sequence (Short Read)

140

SRA760126

SRX4562247

subsp. pekinensis

Whole Genome Sequence (Short Read)

55

SRA760126

SRX4562248

subsp. pekinensis

Whole Genome Sequence (Short Read)

54

SRA760126

SRX4562250

subsp. pekinensis

Whole Genome Sequence (Short Read)

110

SRA760126

SRX4562252

subsp. pekinensis

Whole Genome Sequence (Short Read)

51

SRA760126

SRX4562253

subsp. pekinensis

Whole Genome Sequence (Short Read)

109

SRA760126

SRX4562258

subsp. pekinensis

Whole Genome Sequence (Short Read)

28

SRA760126

SRX4562262

subsp. pekinensis

Whole Genome Sequence (Short Read)

126

SRA760126

SRX4562274

subsp. pekinensis

Whole Genome Sequence (Short Read)

79

SRA760126

SRX4562275

subsp. pekinensis

Whole Genome Sequence (Short Read)

78

SRA760126

SRX4562276

subsp. pekinensis

Whole Genome Sequence (Short Read)

80

SRA760126

SRX4562279

subsp. pekinensis

Whole Genome Sequence (Short Read)

165

SRA760126

SRX4562280

subsp. pekinensis

Whole Genome Sequence (Short Read)

164

SRA760126

SRX4562285

subsp. pekinensis

Whole Genome Sequence (Short Read)

46

SRA760126

SRX4562287

subsp. pekinensis

Whole Genome Sequence (Short Read)

48

SRA760126

SRX4562289

subsp. pekinensis

Whole Genome Sequence (Short Read)

60

SRA760126

SRX4562298

subsp. pekinensis

Whole Genome Sequence (Short Read)

56

SRA760126

SRX4562302

subsp. pekinensis

Whole Genome Sequence (Short Read)

185

SRA760126

SRX4562306

subsp. pekinensis

Whole Genome Sequence (Short Read)

181

SRA760126

SRX4562310

subsp. pekinensis

Whole Genome Sequence (Short Read)

102

SRA760126

SRX4562313

subsp. pekinensis

Whole Genome Sequence (Short Read)

83

SRA760126

SRX4562317

subsp. pekinensis

Whole Genome Sequence (Short Read)

105

SRA760126

SRX4562318

subsp. pekinensis

Whole Genome Sequence (Short Read)

20

SRA760126

SRX4562319

subsp. pekinensis

Whole Genome Sequence (Short Read)

21

SRA760126

SRX4562325

subsp. pekinensis

Whole Genome Sequence (Short Read)

121

SRA760126

SRX4562331

subsp. pekinensis

Whole Genome Sequence (Short Read)

64

SRA760126

SRX4562336

subsp. pekinensis

Whole Genome Sequence (Short Read)

63

SRA760126

SRX4562337

subsp. pekinensis

Whole Genome Sequence (Short Read)

168

SRA760126

SRX4562341

subsp. pekinensis

Whole Genome Sequence (Short Read)

36

SRA760126

SRX4562348

subsp. pekinensis

Whole Genome Sequence (Short Read)

38

SRA760126

SRX4562350

subsp. pekinensis

Whole Genome Sequence (Short Read)

39

SRA760126

SRX4562351

subsp. pekinensis

Whole Genome Sequence (Short Read)

43

SRA760126

SRX4562354

subsp. pekinensis

Whole Genome Sequence (Short Read)

44

SRA760126

SRX4562355

subsp. pekinensis

Whole Genome Sequence (Short Read)

96

SRA760126

SRX4562359

subsp. pekinensis

Whole Genome Sequence (Short Read)

99

SRA760126

SRX4562360

subsp. pekinensis

Whole Genome Sequence (Short Read)

100

SRA760126

SRX4562362

subsp. pekinensis

Whole Genome Sequence (Short Read)

142

SRA760126

SRX4562366

subsp. pekinensis

Whole Genome Sequence (Short Read)

190

SRA760126

SRX4562371

subsp. pekinensis

Whole Genome Sequence (Short Read)

187

SRA760126

SRX4562372

subsp. pekinensis

Whole Genome Sequence (Short Read)

186

SRA760126

SRX4562373

subsp. pekinensis

Whole Genome Sequence (Short Read)

138

SRA760126

SRX4562379

subsp. pekinensis

Whole Genome Sequence (Short Read)

11

SRA760126

SRX4562394

subsp. pekinensis

Whole Genome Sequence (Short Read)

49

SRA760126

SRX4562396

subsp. pekinensis

Whole Genome Sequence (Short Read)

50

SRA760126

SRX4562397

subsp. pekinensis

Whole Genome Sequence (Short Read)

70

SRA760126

SRX4562402

subsp. pekinensis