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アセンブル , シーケンス , Assemble , Sequence , Brassica rapa subsp. pekinensis , Chinese cabbage , ハクサイ (pekinensis亜種)

Brassica rapa

Genome Assembly ID:t3711.G001

Sequence Name:Brapa_sequence_v3.0

Details of the Assembled Genome Sequences

Assembly Name Brapa_sequence_v3.0 Biological Sample subsp. pekinensis, inbred line Chiifu-401-42, Chinese cabbage
Number of Sequences 1,103 Number of Chromosomes 2n = 2x = 20
Total Length (bp) 353,140,194 N50 Length (bp) 28,928,902
Number of Genes 46,250 Number of Genes Source File Brapa_genome_v3.0_pep.fasta
Number of Genes Annotated by Hayai-annotation 46,250 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, BioNano, Hi-C Read Depth 30x
Assembly Method Canu v1.5, BWA v0.7.15, Pilon v1.22 Estimated Genome Size (Mb) 443
Sequencing Method Comments NA Comments Chinese Cabbage, accession Chiifu-401-42
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Hongkun Zheng (Biomarker Technologies Corporation), Xiaowu Wang (Chinese Academy of Agricultural Science) Data Source BRAD: Brassica Database
DOI/PMID 10.1038/s41438-018-0071-9 Data Source URL http://brassicadb.cn
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.3%[S:84.8%,D:14.5%],F:0.2%,M:0.5%,n:1614 BUSCO Gene (pep/cds) C:98.0%[S:84.3%,D:13.7%],F:0.5%,M:1.5%,n:1614

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