Sequence Name:Brapa_sequence_v3.0
Assembly Name | Brapa_sequence_v3.0 | Biological Sample | subsp. pekinensis, inbred line Chiifu-401-42, Chinese cabbage |
Number of Sequences | 1,103 | Number of Chromosomes | 2n = 2x = 20 |
Total Length (bp) | 353,140,194 | N50 Length (bp) | 28,928,902 |
Number of Genes | 46,250 | Number of Genes Source File | Brapa_genome_v3.0_pep.fasta |
Number of Genes Annotated by Hayai-annotation | 46,250 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio, BioNano, Hi-C | Read Depth | 30x |
Assembly Method | Canu v1.5, BWA v0.7.15, Pilon v1.22 | Estimated Genome Size (Mb) | 443 |
Sequencing Method Comments | NA | Comments | Chinese Cabbage, accession Chiifu-401-42 |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Hongkun Zheng (Biomarker Technologies Corporation), Xiaowu Wang (Chinese Academy of Agricultural Science) | Data Source | BRAD: Brassica Database |
DOI/PMID | 10.1038/s41438-018-0071-9 | Data Source URL | http://brassicadb.cn |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.3%[S:84.8%,D:14.5%],F:0.2%,M:0.5%,n:1614 | BUSCO Gene (pep/cds) | C:98.0%[S:84.3%,D:13.7%],F:0.5%,M:1.5%,n:1614 |