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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G46450.1
PEP
AT5G46450.1
Position on the Genome Chromosome Chr5
Start Position 18835618
End Position 18839546
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00304944
KusakiDB version 2
Evidence is present No
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Toll/interleukin-1 receptor homology (TIR) domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF00931,PF07725,PF01582
Pfam Description Details
InterPro ID
IPR002182,IPR036390,IPR032675,IPR011713,IPR027417,IPR003593,IPR000157,IPR035897
InterPro Description Details
GO ID
GO:0050135,GO:0061809,GO:0007165,GO:0043531,GO:0006952
GO Description Details
GOslim ID
GO:0009975,GO:0016787,GO:0000166,GO:0043167,GO:0050789,GO:0007154,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase
OrthoDB(1 item)
9557at33090
Toll/interleukin-1 receptor homology (TIR) domain
Pfam(3 items)
 
NB-ARC domain
 
Leucine Rich Repeat
 
TIR domain
InterPro(8 items)
 
Leucine-rich repeat 3
 
P-loop_NTPase
 
AAA+ ATPase domain
 
Toll/interleukin-1 receptor homology (TIR) domain
 
Toll_tir_struct_dom_sf
Gene ontology(5 items)
MF
NAD(P)+ nucleosidase activity
MF
NAD+ nucleotidase, cyclic ADP-ribose generating
BP
signal transduction
BP
defense response
GO slim(7 items)
MF
cyclase activity
MF
hydrolase activity
MF
nucleotide binding
BP
regulation of biological process
BP
cell communication
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.