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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G14820.1
PEP
AT5G14820.1
Position on the Genome Chromosome Chr5
Start Position 4792072
End Position 4793868
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00045844
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-uniprot
OrthoDB Database version 10.1
Description
Pentatricopeptide repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Pentatricopeptide repeat-containing protein At3g62540, mitochondrial
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF17177,PF01535,PF13041
Pfam Description Details
InterPro ID
IPR002885,IPR011990,IPR033443
InterPro Description Details
GO ID
GO:0005739
GO Description Details
GOslim ID
GO:0005739
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Pentatricopeptide repeat-containing protein At3g62540, mitochondrial
OrthoDB(1 item)
81635at33090
Pentatricopeptide repeat
Pfam(3 items)
 
Pentacotripeptide-repeat region of PRORP
 
PPR repeat
 
PPR repeat family
InterPro(3 items)
 
Pentatricopeptide repeat
 
TPR-like_helical_dom_sf
 
Pentacotripeptide-repeat region of PRORP
Gene ontology(1 item)
CC
mitochondrion
GO slim(1 item)
CC
mitochondrion

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.