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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G19490.1
PEP
AT4G19490.1
Position on the Genome Chromosome Chr4
Start Position 10616017
End Position 10622934
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319904
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Vacuolar protein sorting-associated protein 54, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Vacuolar protein sorting-associated protein 54, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF07928
Pfam Description Details
InterPro ID
IPR012501,IPR039745
InterPro Description Details
GO ID
GO:0000139,GO:0015031,GO:0006896,GO:0009507,GO:0000938,GO:0019905,GO:0005829,GO:0042147
GO Description Details
GOslim ID
GO:0005575,GO:0031982,GO:0051641,GO:0005737,GO:0016192,GO:0005515,GO:0015031,GO:0032991,GO:0005794,GO:0009536
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G19490
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Vacuolar protein sorting-associated protein 54, chloroplastic
OrthoDB(1 item)
21069at33090
Vacuolar protein sorting-associated protein 54, C-terminal
Pfam(1 item)
 
Vps54-like protein
InterPro(2 items)
 
Vacuolar protein sorting-associated protein 54, C-terminal
Gene ontology(8 items)
CC
Golgi membrane
BP
protein transport
BP
Golgi to vacuole transport
MF
syntaxin binding
BP
retrograde transport, endosome to Golgi
GO slim(10 items)
CC
cellular_component
BP
cellular localization
BP
vesicle-mediated transport
MF
protein binding
BP
protein transport
CC
protein-containing complex
CC
Golgi apparatus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.