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Solanum lycopersicum

Assembly Name:SL3.00

Gene File:ITAG3.2_proteins.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
Solyc06g074640.2.1
PEP
Solyc06g074640.2.1
Position on the Genome Chromosome SL3.0ch06
Start Position 46324055
End Position 46331104
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01628334
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, PHD-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00628,PF15612,PF02791
Pfam Description Details
InterPro ID
IPR019786,IPR028942,IPR018501,IPR001965,IPR011011,IPR013083,IPR019787
InterPro Description Details
GO ID
GO:0005634,GO:0046872
GO Description Details
GOslim ID
GO:0005634,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Solanum lycopersicum
Family Solanaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , cv. Heinz 1706 , Solanaceae , ナス科 , Solanum , ナス属 , Tomato, Cherry tomato , トマト, ミニトマト, マメトマト Tomato , トマト

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
1927at33090
Zinc finger, PHD-type
Pfam(3 items)
 
PHD-finger
 
WSTF, HB1, Itc1p, MBD9 motif 1
 
DDT domain
InterPro(7 items)
 
Zinc_finger_PHD-type_CS
 
Znf_RING/FYVE/PHD
 
Zinc finger, PHD-finger
Gene ontology(2 items)
MF
metal ion binding
GO slim(2 items)

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.