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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G60600.1
PEP
AT5G60600.1
Position on the Genome Chromosome Chr5
Start Position 24359447
End Position 24363274
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00308416
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF04551
Pfam Description Details
InterPro ID
IPR004588,IPR011005,IPR017178
InterPro Description Details
GO ID
GO:0009507,GO:0009536,GO:0009617,GO:0016114,GO:0046429,GO:0009941,GO:0051539,GO:0009862,GO:0005506,GO:0009570,GO:0019288
GO Description Details
GOslim ID
GO:0009536,GO:0051540,GO:0050789,GO:0050896,GO:0043167,GO:0046490,GO:0007154,GO:0006081,GO:0016491,GO:0006082,GO:0044255,GO:0002376,GO:0044419
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G60600
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
OrthoDB(1 item)
39913at33090
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
Pfam(1 item)
 
GcpE protein
InterPro(3 items)
 
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
 
Dihydropteroate_synth-like
 
IspG_atypical
Gene ontology(11 items)
BP
response to bacterium
BP
terpenoid biosynthetic process
MF
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
CC
chloroplast envelope
MF
4 iron, 4 sulfur cluster binding
BP
systemic acquired resistance, salicylic acid mediated signaling pathway
MF
iron ion binding
CC
chloroplast stroma
BP
isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO slim(13 items)
MF
metal cluster binding
BP
regulation of biological process
BP
response to stimulus
BP
isopentenyl diphosphate metabolic process
BP
cell communication
BP
cellular aldehyde metabolic process
MF
oxidoreductase activity
BP
organic acid metabolic process
BP
cellular lipid metabolic process
BP
immune system process
BP
interspecies interaction between organisms

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.