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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G49030.1
PEP
AT5G49030.1
Position on the Genome Chromosome Chr5
Start Position 19875091
End Position 19882291
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02032607
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Aminoacyl-tRNA synthetase, class Ia
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Isoleucine--tRNA ligase, chloroplastic/mitochondrial
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF08264,PF00133,PF06827
Pfam Description Details
InterPro ID
IPR023585,IPR002300,IPR014729,IPR001412,IPR013155,IPR002301,IPR010663,IPR009008,IPR009080,IPR033708
InterPro Description Details
GO ID
GO:0004822,GO:0009507,GO:0032543,GO:0000049,GO:0046872,GO:0006428,GO:0005739,GO:0002161,GO:0009570,GO:0048481,GO:0005524
GO Description Details
GOslim ID
GO:0009536,GO:0016070,GO:0016787,GO:0000003,GO:0032501,GO:0005739,GO:0000166,GO:0043167,GO:0006520,GO:0016874,GO:0065008,GO:0032502,GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G49030
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Isoleucine--tRNA ligase, chloroplastic/mitochondrial
OrthoDB(1 item)
5174at33090
Aminoacyl-tRNA synthetase, class Ia
Pfam(3 items)
 
Anticodon-binding domain of tRNA
 
tRNA synthetases class I (I, L, M and V)
 
Zinc finger found in FPG and IleRS
InterPro(10 items)
 
Ile-tRNA-ligase_type1
 
Aminoacyl-tRNA synthetase, class Ia
 
Rossmann-like_a/b/a_fold
 
aa-tRNA-synth_I_CS
 
Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
 
Ile-tRNA-ligase
 
Zinc finger, FPG/IleRS-type
 
Val/Leu/Ile-tRNA-synth_edit
 
tRNAsynth_Ia_anticodon-bd
 
Anticodon_Ile_BEm
Gene ontology(11 items)
MF
isoleucine-tRNA ligase activity
BP
mitochondrial translation
MF
metal ion binding
BP
isoleucyl-tRNA aminoacylation
CC
mitochondrion
MF
aminoacyl-tRNA editing activity
CC
chloroplast stroma
BP
plant ovule development
GO slim(13 items)
BP
RNA metabolic process
MF
hydrolase activity
BP
multicellular organismal process
CC
mitochondrion
MF
nucleotide binding
BP
cellular amino acid metabolic process
MF
ligase activity
BP
regulation of biological quality
BP
developmental process
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.