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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G03940.1
PEP
AT5G03940.1
Position on the Genome Chromosome Chr5
Start Position 1060265
End Position 1063257
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00459588
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Signal recognition particle, SRP54 subunit
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Signal recognition particle 54 kDa protein, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF02881,PF00448,PF02978
Pfam Description Details
InterPro ID
IPR036891,IPR022941,IPR004780,IPR027417,IPR042101,IPR013822,IPR000897,IPR004125,IPR003593
InterPro Description Details
GO ID
GO:0003924,GO:0009570,GO:0005886,GO:0005525,GO:0009507,GO:0006614,GO:0008312,GO:0070208,GO:0005786,GO:0032991,GO:0019904
GO Description Details
GOslim ID
GO:0009536,GO:0000166,GO:0043167,GO:0065003,GO:0016787,GO:0005575,GO:0015031,GO:0051641,GO:0001882,GO:0005515,GO:0032991,GO:0003676,GO:0016020,GO:0048500
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G03940
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Signal recognition particle 54 kDa protein, chloroplastic
OrthoDB(1 item)
181706at33090
Signal recognition particle, SRP54 subunit
Pfam(3 items)
 
SRP54-type protein, helical bundle domain
 
SRP54-type protein, GTPase domain
 
Signal peptide binding domain
InterPro(9 items)
 
Signal_recog_part_SRP54_M_sf
 
P-loop_NTPase
 
Signal recognition particle, SRP54 subunit, helical bundle
 
Signal recognition particle, SRP54 subunit, GTPase domain
 
Signal recognition particle, SRP54 subunit, M-domain
 
AAA+ ATPase domain
Gene ontology(11 items)
MF
GTPase activity
CC
chloroplast stroma
CC
plasma membrane
BP
SRP-dependent cotranslational protein targeting to membrane
MF
7S RNA binding
BP
protein heterotrimerization
CC
signal recognition particle, endoplasmic reticulum targeting
CC
protein-containing complex
MF
protein domain specific binding
GO slim(14 items)
MF
nucleotide binding
BP
protein-containing complex assembly
MF
hydrolase activity
CC
cellular_component
BP
protein transport
BP
cellular localization
MF
nucleoside binding
MF
protein binding
CC
protein-containing complex
MF
nucleic acid binding
CC
signal recognition particle

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.