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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G01160.1
PEP
AT5G01160.1
Position on the Genome Chromosome Chr5
Start Position 54280
End Position 55727
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00919096
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
RING-type E3 ubiquitin transferase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR040380,IPR040383,IPR013083
InterPro Description Details
GO ID
GO:0046872,GO:0061630
GO Description Details
GOslim ID
GO:0019787,GO:0043167,GO:0006464
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
RING-type E3 ubiquitin transferase
OrthoDB(1 item)
160798at33090
Zinc finger C2H2-type
InterPro(3 items)
 
HAKAI-like_RING-HC
 
Znf_RING/FYVE/PHD
Gene ontology(2 items)
MF
metal ion binding
MF
ubiquitin protein ligase activity
GO slim(3 items)
MF
ubiquitin-like protein transferase activity
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.