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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G16420.1
PEP
AT4G16420.1
Position on the Genome Chromosome Chr4
Start Position 9262805
End Position 9265775
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00139993
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcriptional adapter
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcriptional adapter ADA2b
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00249,PF00569
Pfam Description Details
InterPro ID
IPR034318,IPR007526,IPR043145,IPR041983,IPR001005,IPR016827,IPR017884,IPR000433,IPR009057
InterPro Description Details
GO ID
GO:0006338,GO:0042127,GO:0008270,GO:0003682,GO:0003713,GO:0003677,GO:0006357,GO:0009735,GO:0009631,GO:0035066,GO:0005634,GO:0009733
GO Description Details
GOslim ID
GO:0003676,GO:0050896,GO:0050789,GO:0065009,GO:0003682,GO:0051276,GO:0008283,GO:0005634,GO:0006464,GO:0009059,GO:0016070,GO:0006351,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G16420
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcriptional adapter ADA2b
OrthoDB(1 item)
140827at33090
Transcriptional adapter
Pfam(2 items)
 
Myb-like DNA-binding domain
 
Zinc finger, ZZ type
InterPro(9 items)
 
SANT/Myb domain
 
Zinc finger, ZZ-type
 
Homeobox-like_sf
Gene ontology(12 items)
BP
chromatin remodeling
BP
regulation of cell population proliferation
MF
zinc ion binding
MF
chromatin binding
MF
transcription coactivator activity
BP
regulation of transcription by RNA polymerase II
BP
response to cytokinin
BP
cold acclimation
BP
positive regulation of histone acetylation
BP
response to auxin
GO slim(13 items)
MF
nucleic acid binding
BP
response to stimulus
BP
regulation of biological process
BP
regulation of molecular function
MF
chromatin binding
BP
chromosome organization
BP
cell population proliferation
BP
cellular protein modification process
BP
macromolecule biosynthetic process
BP
RNA metabolic process
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.