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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G52380.1
PEP
AT3G52380.1
Position on the Genome Chromosome Chr3
Start Position 19421619
End Position 19422855
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00156241
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
RNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00076
Pfam Description Details
InterPro ID
IPR012677,IPR000504,IPR035979
InterPro Description Details
GO ID
GO:0003676
GO Description Details
GOslim ID
GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
163258at33090
RNA-binding domain superfamily
Pfam(1 item)
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(3 items)
 
Nucleotide-bd_a/b_plait_sf
 
RNA recognition motif domain
 
RBD_domain_sf
Gene ontology(1 item)
MF
nucleic acid binding
GO slim(1 item)
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.