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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G27740.1
PEP
AT3G27740.1
Position on the Genome Chromosome Chr3
Start Position 10281470
End Position 10283792
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00402157
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Carbamoyl-phosphate synthase small subunit, N-terminal domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Carbamoyl-phosphate synthase small chain, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00117,PF00988
Pfam Description Details
InterPro ID
IPR036480,IPR002474,IPR006274,IPR017926,IPR029062,IPR035686
InterPro Description Details
GO ID
GO:0006541,GO:0009507,GO:0006526,GO:0004088,GO:0005737,GO:0044205,GO:0009570,GO:0005951,GO:0016036,GO:0006807,GO:0005524,GO:0006207
GO Description Details
GOslim ID
GO:0043167,GO:0000166,GO:0009117,GO:0009536,GO:0006139,GO:0005737,GO:0006520,GO:0007154,GO:0006807,GO:0032991,GO:0016874,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G27740
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Carbamoyl-phosphate synthase small chain, chloroplastic
OrthoDB(1 item)
113991at33090
Carbamoyl-phosphate synthase small subunit, N-terminal domain
Pfam(2 items)
 
Glutamine amidotransferase class-I
 
Carbamoyl-phosphate synthase small chain, CPSase domain
InterPro(6 items)
 
CarbP_synth_ssu_N_sf
 
Carbamoyl-phosphate synthase small subunit, N-terminal domain
 
CarbamoylP_synth_ssu
 
Glutamine amidotransferase
 
Class_I_gatase-like
 
CPSase_GATase1
Gene ontology(12 items)
BP
glutamine metabolic process
BP
arginine biosynthetic process
MF
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BP
'de novo' UMP biosynthetic process
CC
chloroplast stroma
CC
carbamoyl-phosphate synthase complex
BP
cellular response to phosphate starvation
BP
nitrogen compound metabolic process
BP
'de novo' pyrimidine nucleobase biosynthetic process
GO slim(12 items)
MF
nucleotide binding
BP
nucleotide metabolic process
BP
nucleobase-containing compound metabolic process
BP
cellular amino acid metabolic process
BP
cell communication
BP
nitrogen compound metabolic process
CC
protein-containing complex
MF
ligase activity
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.