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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G22310.1
PEP
AT3G22310.1
Position on the Genome Chromosome Chr3
Start Position 7887382
End Position 7889806
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00710622
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Helicase, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Putative mitochondrial RNA helicase 1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00270,PF00271
Pfam Description Details
InterPro ID
IPR001650,IPR011545,IPR014014,IPR027417,IPR014001
InterPro Description Details
GO ID
GO:0003676,GO:0004386,GO:0005524
GO Description Details
GOslim ID
GO:0003676,GO:0043167,GO:0000166,GO:0004386
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Putative mitochondrial RNA helicase 1
OrthoDB(1 item)
39598at33090
Helicase, C-terminal
Pfam(2 items)
 
DEAD/DEAH box helicase
 
Helicase conserved C-terminal domain
InterPro(5 items)
 
Helicase, C-terminal
 
DEAD/DEAH box helicase domain
 
RNA_helicase_DEAD_Q_motif
 
P-loop_NTPase
 
Helicase_ATP-bd
Gene ontology(3 items)
MF
nucleic acid binding
MF
helicase activity
GO slim(4 items)
MF
nucleic acid binding
MF
nucleotide binding
MF
helicase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.