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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G17590.1
PEP
AT3G17590.1
Position on the Genome Chromosome Chr3
Start Position 6017313
End Position 6019591
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00250182
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SNF5/SMARCB1/INI1
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Chromatin structure-remodeling complex protein BSH
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF04855
Pfam Description Details
InterPro ID
IPR006939
InterPro Description Details
GO ID
GO:0016514,GO:0003712,GO:0005634,GO:0007049,GO:0006357,GO:0006338
GO Description Details
GOslim ID
GO:0006351,GO:0051276,GO:0050789,GO:0032991,GO:0005634,GO:0016070,GO:0005694,GO:0007049,GO:0009059,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G17590
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Chromatin structure-remodeling complex protein BSH
OrthoDB(1 item)
166254at33090
SNF5/SMARCB1/INI1
Pfam(1 item)
 
SNF5 / SMARCB1 / INI1
InterPro(1 item)
 
SNF5/SMARCB1/INI1
Gene ontology(6 items)
CC
SWI/SNF complex
MF
transcription coregulator activity
BP
regulation of transcription by RNA polymerase II
BP
chromatin remodeling
GO slim(10 items)
BP
transcription, DNA-templated
BP
chromosome organization
BP
regulation of biological process
CC
protein-containing complex
BP
RNA metabolic process
BP
macromolecule biosynthetic process
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.