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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G14230.1
PEP
AT3G14230.1
Position on the Genome Chromosome Chr3
Start Position 4737616
End Position 4739000
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01622739
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
AP2/ERF domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Ethylene-responsive transcription factor RAP2-2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00847
Pfam Description Details
InterPro ID
IPR016177,IPR001471,IPR036955
InterPro Description Details
GO ID
GO:0005634,GO:0010468,GO:0003700,GO:0001666,GO:0009873,GO:0000976
GO Description Details
GOslim ID
GO:0050896,GO:0065009,GO:0003676,GO:0050789,GO:0043170,GO:0006351,GO:0005634,GO:0007154,GO:0005575
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
ERF family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G14230
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Ethylene-responsive transcription factor RAP2-2
OrthoDB(1 item)
154921at33090
AP2/ERF domain
Pfam(1 item)
 
AP2 domain
InterPro(3 items)
 
DNA-bd_dom_sf
 
AP2/ERF domain
 
AP2/ERF_dom_sf
Gene ontology(6 items)
BP
regulation of gene expression
MF
DNA-binding transcription factor activity
BP
response to hypoxia
BP
ethylene-activated signaling pathway
MF
transcription regulatory region sequence-specific DNA binding
GO slim(9 items)
BP
response to stimulus
BP
regulation of molecular function
MF
nucleic acid binding
BP
regulation of biological process
BP
macromolecule metabolic process
BP
transcription, DNA-templated
BP
cell communication
CC
cellular_component

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.