Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G47940.1
PEP
AT2G47940.1
Position on the Genome Chromosome Chr2
Start Position 19618372
End Position 19622164
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00188653
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
PDZ domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
DEGP protease 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF17815,PF13180
Pfam Description Details
InterPro ID
IPR001940,IPR041517,IPR009003,IPR036034,IPR001478
InterPro Description Details
GO ID
GO:0004252
GO Description Details
GOslim ID
GO:0008233
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
DEGP protease 2
OrthoDB(1 item)
44614at33090
PDZ domain
Pfam(2 items)
 
PDZ domain
InterPro(5 items)
 
Peptidase_S1C
 
Peptidase_S1_PA
Gene ontology(1 item)
MF
serine-type endopeptidase activity
GO slim(1 item)
MF
peptidase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.