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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G20890.1
PEP
AT2G20890.1
Position on the Genome Chromosome Chr2
Start Position 8987783
End Position 8989185
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00556895
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Protein Thf1
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein THYLAKOID FORMATION 1, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF11264
Pfam Description Details
InterPro ID
IPR017499
InterPro Description Details
GO ID
GO:0009532,GO:1903426,GO:0009941,GO:0045038,GO:0010027,GO:0005739,GO:0009527,GO:0010319,GO:0009507,GO:0009534,GO:0009535,GO:0016021,GO:0010207,GO:0015996,GO:0009528,GO:1902458,GO:0009570,GO:0045037,GO:0010182,GO:2000070,GO:0009707
GO Description Details
GOslim ID
GO:0016020,GO:0009536,GO:0007154,GO:0008152,GO:0010118,GO:0009579,GO:0005575,GO:0061024,GO:0015031,GO:0005739,GO:0042440,GO:0046483,GO:0051641,GO:0006725,GO:0065003,GO:0050789,GO:0015979,GO:0050896,GO:0006091,GO:0009657,GO:0006807
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Protein THYLAKOID FORMATION 1, chloroplastic
OrthoDB(1 item)
195021at33090
Protein Thf1
Pfam(1 item)
 
Thylakoid formation protein
InterPro(1 item)
Gene ontology(21 items)
CC
plastid stroma
BP
regulation of reactive oxygen species biosynthetic process
CC
chloroplast envelope
BP
protein import into chloroplast thylakoid membrane
BP
thylakoid membrane organization
CC
mitochondrion
CC
plastid outer membrane
CC
chloroplast thylakoid
CC
chloroplast thylakoid membrane
CC
integral component of membrane
BP
photosystem II assembly
BP
chlorophyll catabolic process
CC
plastid inner membrane
BP
positive regulation of stomatal opening
CC
chloroplast stroma
BP
protein import into chloroplast stroma
BP
sugar mediated signaling pathway
BP
regulation of response to water deprivation
CC
chloroplast outer membrane
GO slim(21 items)
BP
cell communication
BP
metabolic process
BP
stomatal movement
CC
cellular_component
BP
membrane organization
BP
protein transport
CC
mitochondrion
BP
pigment metabolic process
BP
heterocycle metabolic process
BP
cellular localization
BP
cellular aromatic compound metabolic process
BP
protein-containing complex assembly
BP
regulation of biological process
BP
photosynthesis
BP
response to stimulus
BP
generation of precursor metabolites and energy
BP
plastid organization
BP
nitrogen compound metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.