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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G55860.1
PEP
AT1G55860.1
Position on the Genome Chromosome Chr1
Start Position 20879900
End Position 20892910
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00164762
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
E3 ubiquitin ligase, domain of unknown function DUF908
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
E3 ubiquitin-protein ligase UPL1
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF00632,PF00627,PF06025,PF06012,PF14377
Pfam Description Details
InterPro ID
IPR010314,IPR010309,IPR035983,IPR016024,IPR015940,IPR025527,IPR009060,IPR003903,IPR000569
InterPro Description Details
GO ID
GO:0000151,GO:0004842,GO:0006511,GO:0045732,GO:0005739,GO:0000209,GO:0061630,GO:0043161,GO:0005829,GO:0005634,GO:0016567,GO:0005737,GO:0009506
GO Description Details
GOslim ID
GO:0005739,GO:0009057,GO:0005737,GO:0006464,GO:0006508,GO:0050789,GO:0000151,GO:0019538,GO:0019787,GO:0005634,GO:0055044
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
E3 ubiquitin-protein ligase UPL1
OrthoDB(1 item)
137at33090
E3 ubiquitin ligase, domain of unknown function DUF908
Pfam(5 items)
 
HECT-domain (ubiquitin-transferase)
 
UBA/TS-N domain
 
Domain of Unknown Function (DUF913)
 
Domain of Unknown Function (DUF908)
 
Domain of unknown function (DUF4414)
InterPro(9 items)
 
E3 ubiquitin ligase, domain of unknown function DUF913
 
E3 ubiquitin ligase, domain of unknown function DUF908
 
Hect_E3_ubiquitin_ligase
 
ARM-type_fold
 
Ubiquitin-associated domain
 
Domain of unknown function DUF4414
 
Ubiquitin interacting motif
Gene ontology(13 items)
CC
ubiquitin ligase complex
MF
ubiquitin-protein transferase activity
BP
ubiquitin-dependent protein catabolic process
BP
positive regulation of protein catabolic process
CC
mitochondrion
BP
protein polyubiquitination
MF
ubiquitin protein ligase activity
BP
proteasome-mediated ubiquitin-dependent protein catabolic process
BP
protein ubiquitination
GO slim(11 items)
CC
mitochondrion
BP
macromolecule catabolic process
BP
cellular protein modification process
BP
regulation of biological process
CC
ubiquitin ligase complex
BP
protein metabolic process
MF
ubiquitin-like protein transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.