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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G50250.1
PEP
AT1G50250.1
Position on the Genome Chromosome Chr1
Start Position 18614398
End Position 18616930
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00373256
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
ATPase, AAA-type, conserved site
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
AAA domain-containing protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00004,PF17862,PF01434
Pfam Description Details
InterPro ID
IPR000642,IPR037219,IPR027417,IPR005936,IPR041569,IPR003959,IPR003593
InterPro Description Details
GO ID
GO:0016021,GO:0005524,GO:0004176,GO:0004222
GO Description Details
GOslim ID
GO:0008233,GO:0016020,GO:0000166,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
AAA domain-containing protein
OrthoDB(1 item)
37811at33090
ATPase, AAA-type, conserved site
Pfam(3 items)
 
ATPase family associated with various cellular activities (AAA)
 
AAA_lid_3
 
Peptidase family M41
InterPro(7 items)
 
Peptidase M41
 
Peptidase_M41-like
 
P-loop_NTPase
 
ATPase, AAA-type, core
 
AAA+ ATPase domain
Gene ontology(4 items)
CC
integral component of membrane
MF
ATP-dependent peptidase activity
MF
metalloendopeptidase activity
GO slim(4 items)
MF
peptidase activity
MF
nucleotide binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.