Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G50000.1
PEP
AT1G50000.1
Position on the Genome Chromosome Chr1
Start Position 18515183
End Position 18517244
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00675978
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ribosomal RNA small subunit methyltransferase E
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
16S rRNA (uracil(1498)-N(3))-methyltransferase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF04452
Pfam Description Details
InterPro ID
IPR015947,IPR029028,IPR006700,IPR029026
InterPro Description Details
GO ID
GO:0008168,GO:0006364,GO:0005737
GO Description Details
GOslim ID
GO:0006396,GO:0005737,GO:0016740,GO:0042254
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
16S rRNA (uracil(1498)-N(3))-methyltransferase
OrthoDB(1 item)
137166at33090
Ribosomal RNA small subunit methyltransferase E
Pfam(1 item)
 
RNA methyltransferase
InterPro(4 items)
 
Alpha/beta_knot_MTases
 
Ribosomal RNA small subunit methyltransferase E
 
tRNA_m1G_MTases_N
Gene ontology(3 items)
MF
methyltransferase activity
BP
rRNA processing
GO slim(4 items)
BP
RNA processing
MF
transferase activity
BP
ribosome biogenesis

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.