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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G49970.1
PEP
AT1G49970.1
Position on the Genome Chromosome Chr1
Start Position 18501936
End Position 18504462
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00443533
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
ATP-dependent Clp protease proteolytic subunit
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
ATP-dependent Clp protease proteolytic subunit
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00574
Pfam Description Details
InterPro ID
IPR023562,IPR029045,IPR001907
InterPro Description Details
GO ID
GO:0004176,GO:0004252
GO Description Details
GOslim ID
GO:0008233
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
ATP-dependent Clp protease proteolytic subunit
OrthoDB(1 item)
117729at33090
ATP-dependent Clp protease proteolytic subunit
Pfam(1 item)
 
Clp protease
InterPro(3 items)
 
Clp protease proteolytic subunit /Translocation-enhancing protein TepA
 
ClpP/crotonase-like_dom_sf
Gene ontology(2 items)
MF
ATP-dependent peptidase activity
MF
serine-type endopeptidase activity
GO slim(1 item)
MF
peptidase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.