Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G11750.1
PEP
AT1G11750.1
Position on the Genome Chromosome Chr1
Start Position 3967609
End Position 3969535
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00395763
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
ATP-dependent Clp protease proteolytic subunit
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
ATP-dependent Clp protease proteolytic subunit 6, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00574
Pfam Description Details
InterPro ID
IPR029045,IPR001907,IPR023562,IPR033135
InterPro Description Details
GO ID
GO:0004176,GO:0009368,GO:0051117,GO:0006515,GO:0009570,GO:0004252
GO Description Details
GOslim ID
GO:0009536,GO:0006508,GO:0005515,GO:0009057,GO:0008233,GO:0009368
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G11750
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
ATP-dependent Clp protease proteolytic subunit 6, chloroplastic
OrthoDB(1 item)
157645at33090
ATP-dependent Clp protease proteolytic subunit
Pfam(1 item)
 
Clp protease
InterPro(4 items)
 
ClpP/crotonase-like_dom_sf
 
Clp protease proteolytic subunit /Translocation-enhancing protein TepA
Gene ontology(6 items)
MF
ATP-dependent peptidase activity
CC
endopeptidase Clp complex
MF
ATPase binding
BP
protein quality control for misfolded or incompletely synthesized proteins
CC
chloroplast stroma
MF
serine-type endopeptidase activity
GO slim(6 items)
MF
protein binding
BP
macromolecule catabolic process
MF
peptidase activity
CC
endopeptidase Clp complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.