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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G11720.1
PEP
AT1G11720.1
Position on the Genome Chromosome Chr1
Start Position 3952460
End Position 3956840
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00622519
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Starch synthase, catalytic domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
SS3
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF16760,PF08323
Pfam Description Details
InterPro ID
IPR013534,IPR005085,IPR011835
InterPro Description Details
GO ID
GO:0019252,GO:2001070,GO:0004373,GO:0009507
GO Description Details
GOslim ID
GO:0009059,GO:0009536,GO:0030246,GO:0016740,GO:0005976
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
47137at33090
Starch synthase, catalytic domain
Pfam(2 items)
 
Starch/carbohydrate-binding module (family 53)
 
Starch synthase catalytic domain
InterPro(3 items)
 
Starch synthase, catalytic domain
 
Carbohydrate binding module family 25
Gene ontology(4 items)
BP
starch biosynthetic process
MF
starch binding
MF
glycogen (starch) synthase activity
GO slim(5 items)
BP
macromolecule biosynthetic process
MF
carbohydrate binding
MF
transferase activity
BP
polysaccharide metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.