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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G67100.1
PEP
AT5G67100.1
Position on the Genome Chromosome Chr5
Start Position 26776994
End Position 26785104
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00208675
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
DNA polymerase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
DNA polymerase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF03104,PF12254,PF00136,PF08996
Pfam Description Details
InterPro ID
IPR012337,IPR042087,IPR024647,IPR036397,IPR023211,IPR015088,IPR006172,IPR017964,IPR043502,IPR006133,IPR006134,IPR038256
InterPro Description Details
GO ID
GO:0051539,GO:0003896,GO:0006270,GO:0005634,GO:0000166,GO:0003677,GO:0006273,GO:0046872,GO:0003887
GO Description Details
GOslim ID
GO:0009057,GO:0043167,GO:0006260,GO:0051540,GO:0016740,GO:0000166,GO:0016070,GO:0003676,GO:0006259,GO:0009059,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
DNA polymerase
OrthoDB(1 item)
39410at33090
DNA polymerase
Pfam(4 items)
 
DNA polymerase family B, exonuclease domain
 
DNA polymerase alpha subunit p180 N terminal
 
DNA polymerase family B
 
DNA Polymerase alpha zinc finger
InterPro(12 items)
 
RNaseH-like_sf
 
DNA polymerase alpha catalytic subunit, N-terminal domain
 
DNA_pol_palm_dom_sf
 
Zinc finger, DNA-directed DNA polymerase, family B, alpha
 
DNA-dir_DNA_pol_B
 
DNA-dir_DNA_pol_B_CS
 
DNA/RNA_pol_sf
 
DNA-directed DNA polymerase, family B, exonuclease domain
 
DNA-directed DNA polymerase, family B, multifunctional domain
 
Pol_alpha_znc_sf
Gene ontology(9 items)
MF
4 iron, 4 sulfur cluster binding
MF
DNA primase activity
BP
DNA replication initiation
MF
nucleotide binding
BP
lagging strand elongation
MF
metal ion binding
MF
DNA-directed DNA polymerase activity
GO slim(11 items)
BP
macromolecule catabolic process
BP
DNA replication
MF
metal cluster binding
MF
transferase activity
MF
nucleotide binding
BP
RNA metabolic process
MF
nucleic acid binding
BP
DNA metabolic process
BP
macromolecule biosynthetic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.