Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G62470.2
PEP
AT5G62470.2
Position on the Genome Chromosome Chr5
Start Position 25079434
End Position 25080858
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00104815
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SANT/Myb domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor MYB96
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00249
Pfam Description Details
InterPro ID
IPR009057,IPR017930,IPR001005
InterPro Description Details
GO ID
GO:0010468,GO:0043565,GO:0009409,GO:0009738,GO:0010115,GO:0009787,GO:0003700,GO:0009733,GO:1904278,GO:0005634,GO:0006355,GO:2000033,GO:0009414,GO:0045893,GO:0006952
GO Description Details
GOslim ID
GO:0005634,GO:0050896,GO:0006351,GO:0050789,GO:0065009,GO:0003676,GO:0007154,GO:0032502,GO:0042180,GO:0006082,GO:0006066,GO:0043170,GO:0032501,GO:0019748,GO:0008152,GO:0000003,GO:0044255
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
MYB family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G62470
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor MYB96
OrthoDB(1 item)
173972at33090
SANT/Myb domain
Pfam(1 item)
 
Myb-like DNA-binding domain
InterPro(3 items)
 
Homeobox-like_sf
 
SANT/Myb domain
Gene ontology(15 items)
BP
regulation of gene expression
MF
sequence-specific DNA binding
BP
response to cold
BP
abscisic acid-activated signaling pathway
BP
regulation of abscisic acid biosynthetic process
BP
regulation of abscisic acid-activated signaling pathway
MF
DNA-binding transcription factor activity
BP
response to auxin
BP
positive regulation of wax biosynthetic process
BP
regulation of transcription, DNA-templated
BP
regulation of seed dormancy process
BP
response to water deprivation
BP
positive regulation of transcription, DNA-templated
BP
defense response
GO slim(17 items)
BP
response to stimulus
BP
transcription, DNA-templated
BP
regulation of biological process
BP
regulation of molecular function
MF
nucleic acid binding
BP
cell communication
BP
developmental process
BP
cellular ketone metabolic process
BP
organic acid metabolic process
BP
alcohol metabolic process
BP
macromolecule metabolic process
BP
multicellular organismal process
BP
secondary metabolic process
BP
metabolic process
BP
cellular lipid metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.