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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G62020.1
PEP
AT5G62020.1
Position on the Genome Chromosome Chr5
Start Position 24916212
End Position 24917194
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00579454
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Winged helix-like DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Heat stress transcription factor B-2a
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00447
Pfam Description Details
InterPro ID
IPR036388,IPR027725,IPR036390,IPR000232
InterPro Description Details
GO ID
GO:0010200,GO:0000978,GO:0000976,GO:0005634,GO:0003700,GO:0006357
GO Description Details
GOslim ID
GO:0003676,GO:0006351,GO:0005634,GO:0050789,GO:0065009,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G62020
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Heat stress transcription factor B-2a
OrthoDB(1 item)
180558at33090
Winged helix-like DNA-binding domain superfamily
Pfam(1 item)
 
HSF-type DNA-binding
InterPro(4 items)
 
WH-like_DNA-bd_sf
 
Heat shock factor (HSF)-type, DNA-binding
Gene ontology(6 items)
BP
response to chitin
MF
RNA polymerase II cis-regulatory region sequence-specific DNA binding
MF
transcription regulatory region sequence-specific DNA binding
MF
DNA-binding transcription factor activity
BP
regulation of transcription by RNA polymerase II
GO slim(6 items)
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
regulation of biological process
BP
regulation of molecular function
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.