Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G60660.1
PEP
AT5G60660.1
Position on the Genome Chromosome Chr5
Start Position 24375673
End Position 24376939
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00579318
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Major intrinsic protein
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable aquaporin PIP2-4
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00230
Pfam Description Details
InterPro ID
IPR022357,IPR034294,IPR000425,IPR023271
InterPro Description Details
GO ID
GO:0015250,GO:0009737,GO:0080170,GO:0009506,GO:0016021,GO:0005886,GO:0048767
GO Description Details
GOslim ID
GO:0016020,GO:0048469,GO:0006810,GO:0042044,GO:0032501,GO:0050896,GO:0055044,GO:0016049,GO:0005215
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G60660
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Probable aquaporin PIP2-4
OrthoDB(1 item)
138092at33090
Major intrinsic protein
Pfam(1 item)
 
Major intrinsic protein
InterPro(4 items)
 
Aquaporin_transptr
 
Major intrinsic protein
 
Aquaporin-like
Gene ontology(7 items)
MF
water channel activity
BP
response to abscisic acid
BP
hydrogen peroxide transmembrane transport
CC
integral component of membrane
CC
plasma membrane
BP
root hair elongation
GO slim(9 items)
BP
cell maturation
BP
fluid transport
BP
multicellular organismal process
BP
response to stimulus
MF
transporter activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.