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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G60200.1
PEP
AT5G60200.1
Position on the Genome Chromosome Chr5
Start Position 24241078
End Position 24241951
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00582443
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, Dof-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Dof zinc finger protein DOF5.3
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02701
Pfam Description Details
InterPro ID
IPR003851
InterPro Description Details
GO ID
GO:0005634,GO:0003700,GO:0046872,GO:0048364,GO:0000976,GO:0090057,GO:0001944,GO:0006355
GO Description Details
GOslim ID
GO:0032501,GO:0005634,GO:0003676,GO:0032502,GO:0050789,GO:0043167,GO:0006351,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
Dof family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Dof zinc finger protein DOF5.3
OrthoDB(1 item)
163918at33090
Zinc finger, Dof-type
Pfam(1 item)
 
Dof domain, zinc finger
InterPro(1 item)
 
Zinc finger, Dof-type
Gene ontology(8 items)
MF
DNA-binding transcription factor activity
MF
metal ion binding
BP
root development
MF
transcription regulatory region sequence-specific DNA binding
BP
root radial pattern formation
BP
vasculature development
BP
regulation of transcription, DNA-templated
GO slim(8 items)
BP
multicellular organismal process
MF
nucleic acid binding
BP
developmental process
BP
regulation of biological process
BP
transcription, DNA-templated
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.