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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G59870.1
PEP
AT5G59870.1
Position on the Genome Chromosome Chr5
Start Position 24115605
End Position 24116144
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00308534
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Histone H2A
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable histone H2A.7
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF16211,PF00125
Pfam Description Details
InterPro ID
IPR009072,IPR007125,IPR032458,IPR032454,IPR002119
InterPro Description Details
GO ID
GO:0000786,GO:0005721,GO:0003677,GO:0003682,GO:0005730,GO:0046982,GO:0000790,GO:0009536,GO:0070828,GO:0006325,GO:0000792,GO:0009506,GO:0006342
GO Description Details
GOslim ID
GO:0051276,GO:0005515,GO:0005730,GO:0009536,GO:0055044,GO:0003682,GO:0000786,GO:0005694,GO:0005634,GO:0016458,GO:0003676,GO:0006351
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G59870
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Probable histone H2A.7
OrthoDB(1 item)
224080at33090
Histone H2A
Pfam(2 items)
 
C-terminus of histone H2A
 
Core histone H2A/H2B/H3/H4
InterPro(5 items)
 
Histone H2A/H2B/H3
 
Histone_H2A_CS
 
Histone H2A, C-terminal domain
Gene ontology(13 items)
CC
pericentric heterochromatin
MF
chromatin binding
MF
protein heterodimerization activity
BP
heterochromatin organization
BP
chromatin organization
CC
heterochromatin
BP
chromatin silencing
GO slim(12 items)
BP
chromosome organization
MF
protein binding
MF
chromatin binding
BP
gene silencing
MF
nucleic acid binding
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.