Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G54520.1
PEP
AT5G54520.1
Position on the Genome Chromosome Chr5
Start Position 22146781
End Position 22149089
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00527046
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40 repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Transducin/WD40 repeat-like superfamily protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00400
Pfam Description Details
InterPro ID
IPR017986,IPR036322,IPR019775,IPR001680,IPR015943
InterPro Description Details
GO ID
GO:0080008
GO Description Details
GOslim ID
GO:0000151
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transducin/WD40 repeat-like superfamily protein
OrthoDB(1 item)
113278at33090
WD40 repeat
Pfam(1 item)
 
WD domain, G-beta repeat
InterPro(5 items)
 
WD40_repeat_dom
 
WD40_repeat_dom_sf
 
WD40_repeat_CS
 
WD40/YVTN_repeat-like_dom_sf
Gene ontology(1 item)
CC
Cul4-RING E3 ubiquitin ligase complex
GO slim(1 item)
CC
ubiquitin ligase complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.