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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G51660.1
PEP
AT5G51660.1
Position on the Genome Chromosome Chr5
Start Position 20980250
End Position 20989268
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00192309
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40/YVTN repeat-like-containing domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
CPSF_A domain-containing protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03178
Pfam Description Details
InterPro ID
IPR015943,IPR004871
InterPro Description Details
GO ID
GO:0003676,GO:0005634
GO Description Details
GOslim ID
GO:0003676,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
CPSF_A domain-containing protein
OrthoDB(1 item)
23251at33090
WD40/YVTN repeat-like-containing domain superfamily
Pfam(1 item)
 
CPSF A subunit region
InterPro(2 items)
 
WD40/YVTN_repeat-like_dom_sf
 
Cleavage/polyadenylation specificity factor, A subunit, C-terminal
Gene ontology(2 items)
MF
nucleic acid binding
GO slim(2 items)
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.