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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G51140.2
PEP
AT5G51140.2
Position on the Genome Chromosome Chr5
Start Position 20784103
End Position 20786793
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01538860
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pseudouridine synthase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Pseudouridine synthase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF00849
Pfam Description Details
InterPro ID
IPR006145,IPR020103,IPR002942,IPR006225,IPR006224
InterPro Description Details
GO ID
GO:0009982,GO:0003723,GO:0001522,GO:0005829
GO Description Details
GOslim ID
GO:0016070,GO:0016853,GO:0003676,GO:0005737,GO:0043412
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Pseudouridine synthase
OrthoDB(1 item)
131584at33090
Pseudouridine synthase
Pfam(1 item)
 
RNA pseudouridylate synthase
InterPro(5 items)
 
Pseudouridine synthase, RsuA/RluB/C/D/E/F
 
PsdUridine_synth_cat_dom_sf
 
RNA-binding S4 domain
 
PsdUridine_synth_RluC/D
 
PsdUridine_synth_RluC/D_CS
Gene ontology(4 items)
MF
pseudouridine synthase activity
BP
pseudouridine synthesis
GO slim(5 items)
BP
RNA metabolic process
MF
isomerase activity
MF
nucleic acid binding
BP
macromolecule modification

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.