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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G49270.1
PEP
AT5G49270.1
Position on the Genome Chromosome Chr5
Start Position 19972021
End Position 19974398
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319161
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
COBRA, plant
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
COBRA-like protein 9
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF04833
Pfam Description Details
InterPro ID
IPR006918
InterPro Description Details
GO ID
GO:0010053,GO:0048765,GO:0005886,GO:0031225,GO:0009932,GO:0010215
GO Description Details
GOslim ID
GO:0043062,GO:0016020,GO:0032501,GO:0032502,GO:0016049,GO:0022607,GO:0071555,GO:0048469
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
COBRA-like protein 9
OrthoDB(1 item)
53489at33090
COBRA, plant
Pfam(1 item)
 
COBRA-like protein
InterPro(1 item)
Gene ontology(6 items)
BP
root epidermal cell differentiation
BP
root hair cell differentiation
CC
plasma membrane
CC
anchored component of membrane
BP
cell tip growth
BP
cellulose microfibril organization
GO slim(8 items)
BP
extracellular structure organization
BP
multicellular organismal process
BP
developmental process
BP
cellular component assembly
BP
cell wall organization
BP
cell maturation

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.