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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G47640.1
PEP
AT5G47640.1
Position on the Genome Chromosome Chr5
Start Position 19309414
End Position 19309986
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00404183
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor CBF/NF-Y/archaeal histone domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Nuclear transcription factor Y subunit B-2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00808
Pfam Description Details
InterPro ID
IPR003958,IPR009072,IPR003956
InterPro Description Details
GO ID
GO:0048574,GO:0046982,GO:0005634,GO:0000976,GO:0009536,GO:0003700,GO:0003712
GO Description Details
GOslim ID
GO:0050896,GO:0050789,GO:0006351,GO:0000003,GO:0009536,GO:0005515,GO:0016070,GO:0005634,GO:0032501,GO:0009059,GO:0032502,GO:0003676,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
NF-YB family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G47640
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Nuclear transcription factor Y subunit B-2
OrthoDB(1 item)
217103at33090
Transcription factor CBF/NF-Y/archaeal histone domain
Pfam(1 item)
 
Histone-like transcription factor (CBF/NF-Y) and archaeal histone
InterPro(3 items)
 
Transcription factor CBF/NF-Y/archaeal histone domain
 
Transcrpt_fac_NFYB/HAP3_CS
Gene ontology(7 items)
BP
long-day photoperiodism, flowering
MF
protein heterodimerization activity
MF
transcription regulatory region sequence-specific DNA binding
MF
DNA-binding transcription factor activity
MF
transcription coregulator activity
GO slim(13 items)
BP
response to stimulus
BP
regulation of biological process
BP
transcription, DNA-templated
MF
protein binding
BP
RNA metabolic process
BP
multicellular organismal process
BP
macromolecule biosynthetic process
BP
developmental process
MF
nucleic acid binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.