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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G47610.1
PEP
AT5G47610.1
Position on the Genome Chromosome Chr5
Start Position 19301399
End Position 19301899
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00249815
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
RING-H2 finger protein ATL79
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF13639
Pfam Description Details
InterPro ID
IPR001841,IPR013083
InterPro Description Details
GO ID
GO:0016567,GO:0016740,GO:0046872,GO:0016021
GO Description Details
GOslim ID
GO:0016020,GO:0006464,GO:0016740,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
RING-H2 finger protein ATL79
OrthoDB(1 item)
210911at33090
Zinc finger, RING-type
Pfam(1 item)
 
Ring finger domain
InterPro(2 items)
 
Zinc finger, RING-type
 
Znf_RING/FYVE/PHD
Gene ontology(4 items)
BP
protein ubiquitination
MF
transferase activity
MF
metal ion binding
CC
integral component of membrane
GO slim(4 items)
BP
cellular protein modification process
MF
transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.