Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G47500.1
PEP
AT5G47500.1
Position on the Genome Chromosome Chr5
Start Position 19271262
End Position 19272845
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00258320
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pectinesterase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Pectinesterase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF01095
Pfam Description Details
InterPro ID
IPR033131,IPR011050,IPR012334,IPR000070
InterPro Description Details
GO ID
GO:0030599,GO:0042545,GO:0045490,GO:0045330
GO Description Details
GOslim ID
GO:0071555,GO:0016787,GO:0009057,GO:0005976
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Pectinesterase
OrthoDB(1 item)
121582at33090
Pectinesterase
Pfam(1 item)
 
Pectinesterase
InterPro(4 items)
 
Pectinesterase_Asp_AS
 
Pectin_lyase_fold/virulence
 
Pectin_lyas_fold
 
Pectinesterase, catalytic
Gene ontology(4 items)
MF
pectinesterase activity
BP
cell wall modification
BP
pectin catabolic process
MF
aspartyl esterase activity
GO slim(4 items)
BP
cell wall organization
MF
hydrolase activity
BP
macromolecule catabolic process
BP
polysaccharide metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.