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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G47010.1
PEP
AT5G47010.1
Position on the Genome Chromosome Chr5
Start Position 19072009
End Position 19078856
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00410154
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
DNA2/NAM7 helicase, AAA domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Regulator of nonsense transcripts 1 homolog
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF13087,PF04851,PF09416,PF13086,PF18141
Pfam Description Details
InterPro ID
IPR040812,IPR018999,IPR006935,IPR027417,IPR041677,IPR014001,IPR041679
InterPro Description Details
GO ID
GO:0003677,GO:0048571,GO:0009863,GO:0010182,GO:0009867,GO:0003724,GO:0009506,GO:0008270,GO:0000932,GO:0005524,GO:0009611,GO:0005737,GO:0000184,GO:0042742,GO:0003723,GO:0003729,GO:0005886,GO:0005829
GO Description Details
GOslim ID
GO:0050896,GO:0016020,GO:0043167,GO:0050789,GO:0043232,GO:0005737,GO:0003676,GO:0055044,GO:0016070,GO:0007154,GO:0009057,GO:0044419,GO:0000166,GO:0004386
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G47010
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Regulator of nonsense transcripts 1 homolog
OrthoDB(1 item)
38589at33090
DNA2/NAM7 helicase, AAA domain
Pfam(5 items)
 
AAA domain
 
Type III restriction enzyme, res subunit
 
RNA helicase (UPF2 interacting domain)
 
AAA domain
 
DUF5599
InterPro(7 items)
 
RNA helicase UPF1, UPF2-interacting domain
 
Helicase/UvrB, N-terminal
 
P-loop_NTPase
 
DNA2/NAM7_AAA_11
 
Helicase_ATP-bd
 
DNA2/NAM7-like_C
Gene ontology(18 items)
BP
long-day photoperiodism
BP
salicylic acid mediated signaling pathway
BP
sugar mediated signaling pathway
BP
jasmonic acid mediated signaling pathway
MF
RNA helicase activity
MF
zinc ion binding
BP
response to wounding
BP
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
BP
defense response to bacterium
CC
plasma membrane
GO slim(14 items)
BP
response to stimulus
BP
regulation of biological process
CC
intracellular non-membrane-bounded organelle
MF
nucleic acid binding
BP
RNA metabolic process
BP
cell communication
BP
macromolecule catabolic process
BP
interspecies interaction between organisms
MF
nucleotide binding
MF
helicase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.