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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G45710.1
PEP
AT5G45710.1
Position on the Genome Chromosome Chr5
Start Position 18541576
End Position 18542706
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00388444
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Winged helix-like DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Heat stress transcription factor A-4c
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00447
Pfam Description Details
InterPro ID
IPR000232,IPR036388,IPR036390,IPR027725
InterPro Description Details
GO ID
GO:0048527,GO:0006357,GO:0048364,GO:0009733,GO:0009408,GO:0005634,GO:0000978,GO:0034605,GO:0009958,GO:0003700,GO:0048530
GO Description Details
GOslim ID
GO:0006351,GO:0050896,GO:0065009,GO:0003676,GO:0050789,GO:0000003,GO:0032502,GO:0032501,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
HSF family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G45710
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Heat stress transcription factor A-4c
OrthoDB(1 item)
136935at33090
Winged helix-like DNA-binding domain superfamily
Pfam(1 item)
 
HSF-type DNA-binding
InterPro(4 items)
 
Heat shock factor (HSF)-type, DNA-binding
 
WH-like_DNA-bd_sf
Gene ontology(11 items)
BP
lateral root development
BP
regulation of transcription by RNA polymerase II
BP
root development
BP
response to auxin
BP
response to heat
MF
RNA polymerase II cis-regulatory region sequence-specific DNA binding
BP
cellular response to heat
BP
positive gravitropism
MF
DNA-binding transcription factor activity
BP
fruit morphogenesis
GO slim(9 items)
BP
transcription, DNA-templated
BP
response to stimulus
BP
regulation of molecular function
MF
nucleic acid binding
BP
regulation of biological process
BP
developmental process
BP
multicellular organismal process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.