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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G43810.1
PEP
AT5G43810.1
Position on the Genome Chromosome Chr5
Start Position 17611939
End Position 17616562
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00101060
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Argonaute, linker 1 domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein argonaute 10
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF16488,PF08699,PF16486,PF02171,PF02170,PF16487
Pfam Description Details
InterPro ID
IPR003165,IPR032472,IPR036397,IPR003100,IPR036085,IPR032474,IPR014811,IPR032473,IPR012337
InterPro Description Details
GO ID
GO:0006417,GO:0010586,GO:0035198,GO:0051607,GO:0035019,GO:0009934,GO:0007275,GO:1902183,GO:0005737,GO:0031047,GO:0009536
GO Description Details
GOslim ID
GO:0050896,GO:0003676,GO:0032501,GO:0002376,GO:0050789,GO:0044419,GO:0032502,GO:0005737,GO:0016070,GO:0016458,GO:0009536
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G43810
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Protein argonaute 10
OrthoDB(1 item)
7722at33090
Argonaute, linker 1 domain
Pfam(6 items)
 
Argonaute linker 2 domain
 
Argonaute linker 1 domain
 
N-terminal domain of argonaute
 
Piwi domain
 
PAZ domain
 
Mid domain of argonaute
InterPro(9 items)
 
Argonaute linker 2 domain
 
Protein argonaute, N-terminal
 
Argonaute, linker 1 domain
 
Protein argonaute, Mid domain
 
RNaseH-like_sf
Gene ontology(11 items)
BP
regulation of translation
BP
miRNA metabolic process
MF
miRNA binding
BP
defense response to virus
BP
somatic stem cell population maintenance
BP
regulation of meristem structural organization
BP
multicellular organism development
BP
regulation of shoot apical meristem development
BP
gene silencing by RNA
GO slim(11 items)
BP
response to stimulus
MF
nucleic acid binding
BP
multicellular organismal process
BP
immune system process
BP
regulation of biological process
BP
interspecies interaction between organisms
BP
developmental process
BP
RNA metabolic process
BP
gene silencing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.