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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G25350.1
PEP
AT5G25350.1
Position on the Genome Chromosome Chr5
Start Position 8794842
End Position 8796882
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00323029
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Leucine-rich repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
EBF2
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13516,PF00646
Pfam Description Details
InterPro ID
IPR036047,IPR032675,IPR006553,IPR001611,IPR001810
InterPro Description Details
GO ID
NA
GO Description
GOslim ID
NA
GO slim Description
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
76646at33090
Leucine-rich repeat
Pfam(2 items)
 
Leucine Rich repeat
 
F-box domain
InterPro(5 items)
 
F-box-like_dom_sf
 
Leu-rich_rpt_Cys-con_subtyp
 
Leucine-rich repeat

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.