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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G24150.1
PEP
AT5G24150.1
Position on the Genome Chromosome Chr5
Start Position 8172594
End Position 8175395
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01667013
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Squalene epoxidase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Squalene monooxygenase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF08491
Pfam Description Details
InterPro ID
IPR013698,IPR040125,IPR036188
InterPro Description Details
GO ID
GO:0016126,GO:0016021,GO:0004506,GO:0050660
GO Description Details
GOslim ID
GO:0004497,GO:0043167,GO:0000166,GO:0016020,GO:0006629
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Squalene monooxygenase
OrthoDB(1 item)
110448at33090
Squalene epoxidase
Pfam(1 item)
 
Squalene epoxidase
InterPro(3 items)
 
Squalene epoxidase
 
Squalene_monox
 
FAD/NAD-bd_sf
Gene ontology(4 items)
BP
sterol biosynthetic process
CC
integral component of membrane
MF
squalene monooxygenase activity
MF
flavin adenine dinucleotide binding
GO slim(5 items)
MF
monooxygenase activity
MF
nucleotide binding
BP
lipid metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.