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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G24110.1
PEP
AT5G24110.1
Position on the Genome Chromosome Chr5
Start Position 8153416
End Position 8154633
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00431036
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WRKY domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable WRKY transcription factor 30
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03106
Pfam Description Details
InterPro ID
IPR003657,IPR036576
InterPro Description Details
GO ID
GO:0042542,GO:0010150,GO:0000976,GO:0005634,GO:0043565,GO:0010193,GO:0003700,GO:0009751,GO:0005737
GO Description Details
GOslim ID
GO:0005634,GO:0065009,GO:0050896,GO:0003676,GO:0050789,GO:0032502,GO:0032501,GO:0006351,GO:0005737
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
WRKY family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Probable WRKY transcription factor 30
OrthoDB(1 item)
186459at33090
WRKY domain
Pfam(1 item)
 
WRKY DNA -binding domain
InterPro(2 items)
Gene ontology(9 items)
BP
response to hydrogen peroxide
BP
leaf senescence
MF
transcription regulatory region sequence-specific DNA binding
MF
sequence-specific DNA binding
BP
response to ozone
MF
DNA-binding transcription factor activity
BP
response to salicylic acid
GO slim(9 items)
BP
regulation of molecular function
BP
response to stimulus
MF
nucleic acid binding
BP
regulation of biological process
BP
developmental process
BP
multicellular organismal process
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.