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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G19310.1
PEP
AT5G19310.1
Position on the Genome Chromosome Chr5
Start Position 6498906
End Position 6503432
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00209733
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SNF2-related, N-terminal domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable ATP-dependent DNA helicase CHR23
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF00176,PF00271,PF14619
Pfam Description Details
InterPro ID
IPR038718,IPR001650,IPR014001,IPR027417,IPR029295,IPR000330
InterPro Description Details
GO ID
GO:0010231,GO:0043044,GO:0045944,GO:0003678,GO:0031490,GO:0008094,GO:0042393,GO:0040008,GO:0009826,GO:0010492,GO:0005634,GO:0005524,GO:0010078,GO:0003677
GO Description Details
GOslim ID
GO:0016049,GO:0043167,GO:0003682,GO:0003676,GO:0004386,GO:0006351,GO:0050789,GO:0032502,GO:0032392,GO:0032501,GO:0000003,GO:0040007,GO:0051276,GO:0005515,GO:0000166,GO:0016787,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Probable ATP-dependent DNA helicase CHR23
OrthoDB(1 item)
8692at33090
SNF2-related, N-terminal domain
Pfam(3 items)
 
SNF2 family N-terminal domain
 
Helicase conserved C-terminal domain
 
Snf2-ATP coupling, chromatin remodelling complex
InterPro(6 items)
 
Helicase, C-terminal
 
Helicase_ATP-bd
 
P-loop_NTPase
 
Snf2, ATP coupling domain
 
SNF2-related, N-terminal domain
Gene ontology(14 items)
BP
maintenance of seed dormancy
BP
ATP-dependent chromatin remodeling
BP
positive regulation of transcription by RNA polymerase II
MF
DNA helicase activity
MF
chromatin DNA binding
MF
DNA-dependent ATPase activity
MF
histone binding
BP
regulation of growth
BP
unidimensional cell growth
BP
maintenance of shoot apical meristem identity
BP
maintenance of root meristem identity
GO slim(17 items)
MF
chromatin binding
MF
nucleic acid binding
MF
helicase activity
BP
transcription, DNA-templated
BP
regulation of biological process
BP
developmental process
BP
DNA geometric change
BP
multicellular organismal process
BP
chromosome organization
MF
protein binding
MF
nucleotide binding
MF
hydrolase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.