Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G17020.1
PEP
AT5G17020.1
Position on the Genome Chromosome Chr5
Start Position 5594904
End Position 5602467
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00410047
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Exportin-1, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein EXPORTIN 1A
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF08389,PF18777,PF03810,PF18784,PF08767,PF18787
Pfam Description Details
InterPro ID
IPR041235,IPR011989,IPR016024,IPR014877,IPR041123,IPR013598,IPR040485,IPR001494
InterPro Description Details
GO ID
GO:0006611,GO:0005643,GO:0000056,GO:0005634,GO:0009408,GO:0009860,GO:0008536,GO:0009846,GO:0009555,GO:0051028,GO:0031965,GO:0046825,GO:0005049,GO:0005737,GO:0000055,GO:0009553,GO:0005829
GO Description Details
GOslim ID
GO:0015031,GO:0006810,GO:0016049,GO:0032502,GO:0051640,GO:0005488,GO:0005575,GO:0016020,GO:0032501,GO:0005737,GO:0000003,GO:0051641,GO:0051704,GO:0005773,GO:0042254,GO:0005643,GO:0015931,GO:0005515,GO:0005634,GO:0050896,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G17020
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Protein EXPORTIN 1A
OrthoDB(1 item)
5963at33090
Exportin-1, C-terminal
Pfam(6 items)
 
Exportin 1-like protein
 
CRM1_repeat
 
Importin-beta N-terminal domain
 
CRM1_repeat_2
 
CRM1 C terminal
 
CRM1_repeat_3
InterPro(8 items)
 
Exp1_repeat_2
 
ARM-type_fold
 
Exportin-1, C-terminal
 
Exportin-1/Importin-beta-like
 
XPO1_repeat_3
 
Importin-beta, N-terminal domain
Gene ontology(17 items)
BP
protein export from nucleus
BP
ribosomal small subunit export from nucleus
BP
response to heat
BP
pollen tube growth
MF
small GTPase binding
BP
pollen germination
BP
pollen development
BP
mRNA transport
CC
nuclear membrane
BP
regulation of protein export from nucleus
MF
nuclear export signal receptor activity
BP
ribosomal large subunit export from nucleus
BP
embryo sac development
GO slim(21 items)
BP
protein transport
BP
developmental process
BP
organelle localization
CC
cellular_component
BP
multicellular organismal process
BP
cellular localization
BP
multi-organism process
BP
ribosome biogenesis
BP
nucleobase-containing compound transport
MF
protein binding
BP
response to stimulus
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.